According to some Christian outlooks we were made for another world. Perhaps, rather, we were made for
this world to recreate, reclaim, and renew unto God's future aspiration by the power of His Spirit. - R.E. Slater
Secularization theory has been massively falsified. We don't live in an age of secularity. We live in an age of
explosive, pervasive religiosity... an age of religious pluralism. - Peter L. Berger
Exploring the edge of life and faith in a post-everything world. - Todd Littleton
I don't need another reason to believe, your love is all around for me to see. - anon
Thou art our need; and in giving us more of thyself thou givest us all. - Khalil Gibran, Prayer XXIII
Be careful what you pretend to be. You become what you pretend to be. - Kurt Vonnegut
Religious beliefs, far from being primary, are often shaped and adjusted by our social goals. - Jim Forest
People, even more than things, need to be restored, renewed, revived, reclaimed, and redeemed; never throw out anyone. - anon
... Certainly God's love has made fools of us all. - R.E. Slater
An apocalyptic Christian faith doesn't wait for Jesus to come, but for Jesus to become in our midst. - R.E. Slater
Christian belief in God begins with the cross and resurrection of Jesus, not with rational apologetics. - Eberhard Jüngel, Jürgen Moltmann
Our knowledge of God is through the 'I-Thou' encounter, not in finding God at the end of a syllogism or argument.
There is a grave danger in any Christian treatment of God as an object. The God of Jesus Christ and Scripture is
irreducibly subject and never made as an object, a force, a
power, or a principle that can be manipulated. - Emil Brunner
Ehyeh Asher Ehyeh means "I will be that who I have yet to become." - God (Ex 3.14)
Our job is to love others without stopping to inquire whether or not they are worthy. - Thomas Merton
The church is God's world-changing social experiment of bringing unlikes and differents to the Eucharist/Communion table
to share life with one another as a new kind of family. When this happens we show to the world what love, justice, peace,
reconciliation, and life together is designed by God to be. The church is God's show-and-tell for the world to see how God wants
us to live as a blended, global, polypluralistic family united with one will, by one Lord, and baptized by one Spirit. - anon
The cross that is planted at the heart of the history of the world cannot be uprooted. - Jacques Ellul

Tuesday, February 4, 2014

Textual Composition of the Testaments - Charts and Diagrams (including Linguistic Sample Study)


SAMPLE CHART AND DIAGRAM ON THE
TRANSMISSION OF ANCIENT LANGUAGES

Ancient Alphabets



SAMPLE CHART AND DIAGRAM ON THE
TRANSMISSION OF THE OLD TESTAMENT TEXT

The interrelationship between various significant ancient manuscripts of the Old Testament, according to the Encyclopaedia Biblica (1903) Some manuscripts are identified by their siglum. LXX here denotes the original Septuagint. - Source: Wikipedia article on the Old Testament



SAMPLE CHARTS AND DIAGRAMS ON
THE COMPOSITION OF THE
NEW TESTAMENT










Gospel Source Theories



SAMPLE RECONSTRUCTION OF
TEXTUAL VARIANTS

How Textual Variations Arise



Variation of Manuscripts from Hypothetical "Original" Text



Source: See link here



Transmission Timelines of a New Testament text - Source: See link here



... JUST FOR FUN ...

THE STUDY OF
LINGUISTICS TRANSMISSION


Network analysis of Genesis 1:3

This idea was stolen blatantly from the Laboratory Exercises in Evolution at the  Biology Department, University of Virginia (Janis Antonovics, Joanna Vondrasek, Doug Taylor), where it is set as a class exercise for learning phylogenetic analysis. In turn, these people credit a similar idea to Barbrook et al. (1998. The phylogeny of the Canterbury Tales. Nature 394: 839), although the originators appear to be Robinson and O'Hara (1996. Cladistic analysis of an Old Norse manuscript tradition. Research in Humanities Computing 4: 115-137). It is an exercise in stemmatology, which can be a lot more tricky than you might think.

Stemmatology is the discipline that attempts to reconstruct the transmission history of a written text on the basis of relationships between the various extant versions (eg. manuscripts or printings). These relationships can be revealed using phylogenetic networks, which is the approach that I present here. A network is more appropriate than a phylogenetic tree, for reasons that will become obvious — the evolution of books is not a simple thing.

Genesis

The original text of the christian Bible was written mostly in Hebrew and Aramaic for the Old Testament, and in Greek for the New Testament. It was later translated into Latin, which was then standardized as the "Vulgate", and this was then almost the only version used in churches for the best part of a millennium. The only texts in Old English consisted usually of either the Gospels or the Psalms only.

This situation was challenged in the late 14th century, when the first Middle English translations of the whole Bible appeared. There was active resistance to this by the formal Church, and so the idea of an English translation was dropped until the mid 16th century, when the Reformation inspired attempts to translate the books into Modern English as part of a new Protestant religion. These moves were sanctioned by the government, with first the Great Bible (1539) and then the King James Version (1611). Various revisions of the latter have appeared, especially since the late 19th century. These days, there is a veritable cottage industry producing new versions of the Bible for various purposes, usually based on the original texts rather than on earlier translations, with various translation principles being employed (eg. Formal Equivalence, Dynamic Equivalence, Closest Natural Equivalence, etc).

You can consult the various versions of the English-language Bible at one or more of several online sites:
The data used below were all obtained from these sites. These sites suggest that the most famous English-language versions of the Bible are: the Geneva Bible (1560), as used throughout the Reformation, and by William Shakespeare as well as by the "Pilgrim Fathers" in America, and the King James Version (1611), which was the standard English text for a quarter of a millennium. The most widespread current Bible is apparently the New International Version, which has been updated several times since its first appearance in 1973.

Stemmatology

The text that I use is the third sentence of the Bible — Genesis 1:3. (The biblical text was first numbered in the Geneva Bible of 1560.) Here is a dated listing of that sentence in all of the early English translations, plus most of the revisions up to the mid-20th century, and a sample of the many recent versions: 

1382 Wycliffe Bible  And God seide, Be maad li3t; and maad is li3t.
1395 Later Wycliffe  And God seide, li3t be maad; and li3t was maad.
1530 Tyndale Bible  Then God sayd: let there be lyghte and there was lyghte.
1535 Coverdale Bible  Than God sayd: let there be light: & there was lyght.
1537 Matthew Bible  And God sayde: let there be light, and there was light.
1539 Great Bible  And God sayde: let there be made lyght, and there was light made.
1560 Geneva Bible  Then God saide, Let there be light: And there was light.
1568 Bishop's Bible  And God sayde, let there be light: and there was light.
1609 Douay-Rheims Bible  And God said: Be light made And light was made.
1611 King James Version  And God said, Let there be light: and there was light.
1750 Challoner Revision  And God said: Be light made. And light was made.
1769 Blayney Revision  And God said, Let there be light: and there was light.
1833 Webster's Bible  And God said, Let there be light: and there was light.
1862 Young's Literal Translation  and God saith, 'Let light be;' and light is.
1885 English Revised Version  And God said, Let there be light: and there was light.
1890 Darby Bible  And God said, Let there be light. And there was light.
1901 American Standard Version  And God said, Let there be light: and there was light.
1950 Knox Bible  Then God said, Let there be light; and the light began.
1952 Revised Standard Version  And God said, "Let there be light"; and there was light.
1971 New American Standard Bible  Then God said, "Let there be light"; and there was light.
1973 New International Version  And God said, "Let there be light," and there was light.
1976 Good News Bible  Then God commanded, "Let there be light" — and light appeared.
1982 New King James Version  Then God said, "Let there be light"; and there was light.
1995 God's Word Translation  Then God said, "Let there be light!" So there was light.
1996 New Living Version  Then God said, "Let there be light," and there was light.
2011 Common English Bible  God said, "Let there be light." And so light appeared.

The first thing we need to do is align the text of these 26 versions, including both words and punctuation. This allows us to directly compare each of the elements of the sentence, comparing like with like as far as their features are concerned.

This is not as easy as it sounds. In this alignment I have separated words when they seem to have a different intent — for example, "was made" is not equivalent to "appeared". I can see endless arguments about the alignment of any text; and, indeed, disagreements about the intent of the original text is what has lead to so many different versions of the Bible being created in English.


This alignment then needs to be coded as a set of characters, which define the hypothesized homology between the various elements of the text. In this case I ended up with 50 additive binary characters for analysis. In general, I used Young's Literal Translation to determine the ancestral state for each character, as this translation was an explicit attempt to emulate the Hebrew original. A nexus-formatted version of the dataset is available here.

Various network methods could be used to summarize the character data. First, I have used a NeighborNet based on hamming distances, as I usually do (see my earlier analyses). As you can see from the graph, there is no simple tree-like relationships among these texts, which calls into question any simplistic attempt at stemmatology. (Note that in two cases there are multiple texts that have identical sentences, and thus they appear at the same location in the graph.)


It is worth pointing out here that Barbrook et al. (1998) produced a bush-like graph from their data for the Canterbury Tales, but only after deleting 14 of their 58 manuscripts, "as they were likely to have been copied from more than one exemplar, either by deliberate conflation of readings or by changing the exemplar during the course of copying." A similar explanation is likely to apply for some of the texts for Genesis 1:3, although many of them were translated directly from the original Hebrew rather than from later translations (eg. the Latin "Vulgate").

Nevertheless, there is a general separation of the older Genesis texts on the right of the graph and the more recent texts on the left. This might be easier to assess if we simplify the graph.

As a simpler summary of the same relationships, I have used a Reduced Median Network, based on r = 2 (the program default). Note that the time order is reversed in this graph, with the older texts on the left and the more recent texts on the right. The only major discrepancy between the two graphs is the relative placement of the Bishop's Bible. (Also, I have not labelled the two cases where there are several texts that have identical sentences.)


Historically, we would expect the Tyndale BibleCoverdale BibleMatthew Bible and Great Bible texts to be closely related, but the Great Bible seems not to fit this expectation. Similarly, we would expect a similarity between the Geneva Bible and the Bishop's Bible, which is also not reflected in the study sentence; nor is the acknowledged debt of the King James Version to the Tyndale Bible.

However, the fact that the Wycliffe Bible and Later Wycliffe are written in Middle English rather than Modern English is clear from their distant relationship to the other texts; and the close historical relationship of the Challoner Revision and the Douay-Rheims Bible is also clear.

Several texts show isolated relationships. The Knox Bible, for example, is unique among the modern texts in being taken from the Latin rather than the original Hebrew, while the Common English Bible is unusual in trying to balance two translation principles (Dynamic Equivalence and Formal Equivalence) rather than using only one.

On the other hand, the New International Version is clearly a very traditional version of the text, given its relationships as shown in the two graphs, which perhaps explains its popularity.

The close association of the Good News Bible with Young's Literal Translation is interesting, given that the former is an (often criticized) free paraphrase of the original Hebrew text while the latter is a literal translation of that same text — you can't get more different translation principles.

Conclusion

The lack of any simple tree-like relationship among these biblical texts makes any attempt to study their phylogeny difficult. My own look at the business of stemmatology suggests that the results here are quite typical of any study of written texts. Part of the problem seems to be that ideas developed in one historical lineage can be transferred to other lineages, and even transferred to earlier parts of those lineages (see my previous post: Time inconsistency in evolutionary networks).  So, even though there is a general historical trend through time, that trend is not consistent enough for a tree-based historical analysis to be effective.


* * * * * * * * * *


Time inconsistency in evolutionary networks
http://phylonetworks.blogspot.com/2012/07/time-inconsistency-in-evolutionary.html

The temporal ordering of the nodes (and branches) is usually treated as an important feature in an evolutionary network of biological organisms, because the order must be time consistent (Baroni et al. 2004, 2006; Moret et al. 2004). That is, for reticulation events the "horizontal" gene flow can only occur between species that are contemporaries. So, speciation events occur successively but reticulation events occur instantaneously (Sang and Zhong 2000).

For example, it would be unrealistic to hypothesize either a hybridization or a horizontal gene transfer event between a species and one of its own ancestors. Furthermore, each reticulation event must not only be consistent on its own but must be consistent in relation to all of the other events.

Mathematically, inconsistency creates directed pseudo-cycles in the network graph, so that it is not acyclic, as required for an evolutionary history (see previous blog post). Time consistency is thus seen as a useful means of validating a network as a potential biological history, and can even be used as a criterion for choosing among otherwise equally optimal networks.

However, evolutionary analysis is not applied only to biological organisms. It has also been applied to the study of languages (Atkinson & Gray 2005) and to cultural objects (Collard et al. 2006). Indeed, Darwin himself recognized early on that it would be important to show that language (a characteristic solely of humans) had a natural origin and that it develops in a genealogical fashion (ie. it has a pedigree).

Thus, both language and cultural objects have an historical component that can be studied, and both can fit into an evolutionary framework of variation + transmission + selection (Dagg 2011). Moreover, the evolutionary history also consists of both vertical and horizontal transmission. This means that the same data-analysis techniques can potentially be applied to biology, language and culture (Heggarty et al. 2010; Gray et al. 2010).

The issue that I wish to raise here is that time consistency is not a requirement of the evolution of either language or cultural objects, the way that it is for biological organisms. Organisms store the information (that is vertically and horizontally transmitted) in genes that they carry with them, which is what restricts reticulation to occurring only between contemporaries. However, language and culture store their "information" externally, either in the minds of people or in permanent or semi-permanent records (either written or pictorial). Thus, the information available for horizontal transmission can come from the distant past, as well as from the present.*

It is important to note that for language and culture the biological ideas of vertical and horizontal transmission of genetic information need modification (Cavalli-Sforza and Feldman 1981). Vertical (or descending) transmission still involves faithful copying of the information (with perhaps some losses or minor modifications). Lateral transfer, however, can be either horizontal transmission (between contemporary generations) or oblique transmission (between different generations), and it is the latter that allows time-travel of information.

Lateral transfer in this context may be a form of hybridization, in which new concepts are added from elsewhere (eg. synonymous words), but is likely to be a form of HGT in which concepts are simply replaced with something from elsewhere (eg. a new word effectively replaces an old word). Recombination, in which concepts are mutually exchanged, may be rather rare.

As an illustration, Dagg (2011) provides some interesting examples of lateral transfer in the parts of mouse traps. For example, he notes that: "Torsion power may have been transmitted laterally from Egyptian torsion traps to prefabricated dead-fall traps." These traps need not be contemporaneous, because the ideas being transferred may be from pictures or descriptions of old traps rather than from concurrently existing traps. (Joachim Dagg also has a couple of blog posts where he further discusses the evolution of mouse traps: post 1 —  post 2.)

As an alternative example, Johnson et al. (1989) provide an evolutionary network showing the history of the various software (mostly) and hardware components of the revolutionary Xerox 8010 "Star" Information System (ie. computer), introduced in April 1981. Note that almost all of the lateral transfer events (single arrows; mostly hybridization) are time inconsistent. To quote the authors: "Although Star was conceived as a product in 1975 and was released in 1981, many of the ideas that went into it were born in projects dating back over three decades."


Fig. 8 – How systems influenced later systems.
This graph summarizes how various systems related to Star have influenced one another over the years. Time progresses downwards. Double arrows indicate direct successors (i.e., follow-on versions). Many "influence arrows" are due to key designers changing jobs or applying concepts from their graduate research to products.

The implications of time-travelling laterally transferred information for network construction methods may be unfortunate, in the sense that evolutionary networks in biology may be quite different from those for language and culture, with the latter pair requiring somewhat different methods. At a minimum, the requirements for choosing among alternative networks will be different.

A quick look at the current literature involving network analysis of languages and cultural artifacts shows an almost universal use of unrooted graphs, most often a Neighbor-Net, Reduced-Median or Median-Joining network. Such networks cannot directly represent evolutionary history because there is no time direction in the graph. This type of analysis thus neatly side-steps the issue of representing time-travelling information in an evolutionary diagram; and it suggests that social scientists have not yet considered the consequences of the potential lack of time consistency in their data.

*Footnote: I suppose that I should be precise, and note that a modern gene bank does allow genetic information to time travel, as well.


References

Atkinson QD, Gray RD (2005) Curious parallels and curious connections — phylogenetic thinking in biology and historical linguistics. Systematic Biology 54: 513-526.

Baroni M, Semple C, Steel M (2004) A framework for representing reticulate evolution. Annals of Combinatorics 8: 391–408.

Baroni M, Semple C, Steel M (2006) Hybrids in real time. Systematic Biology 55: 46–56.

Cavalli-Sforza LL, Feldman MW (1981) Cultural Transmission and Evolution. Princeton University Press, Princeton.

Collard M, Shennan SJ, Tehrani JJ (2006) Branching, blending, and the evolution of cultural similarities and differences among human populations. Evolution and Human Behavior 27: 169–184.

Dagg JL (2011) Exploring mouse trap history. Evoluton: Education and Outreach 4: 397–414.

Gray RD, Bryant D, Greenhill SJ (2010) On the shape and fabric of human history. Philosophical Transactions of the Royal Society of London series B 365: 3923-3933.

Heggarty P, Maguire W, McMahon A (2010) Splits or waves? Trees or webs? How divergence measures and network analysis can unravel language histories. Philosophical Transactions of the Royal Society of London series B 365: 3829-3843.

Johnson J, Roberts TL, Verplank W, Smith DC, Irby C, Beard M, Mackey K (1989) The Xerox "Star": a retrospective. IEEE Computer 22: 11-29.

Moret BME, Nakhleh L, Warnow T, Linder CR, Tholse A, Padolina A, Sun J, Timme R (2004) Phylogenetic networks: modeling, reconstructibility, and accuracy. IEEE/ACM Transactions on Computational Biology and Bioinformatics 1: 13–23.

Sang T, Zhong Y (2000) Testing hybridization hypotheses based on incongruent gene trees. Systematic Biology 49: 422–434.

Comments 1 - Nice post. I'd add one comment: It is important to distinguish between the true evolutionary history, which has to be time consistent, and the reconstructed one, which may have a reticulation edge from an ancestor to descendant, simply due to incomplete taxon sampling (or extinction). In other words, except for ensuring acyclicity, I don't think one needs impose time consistency constraints during inference.

Reply by Author -Thanks. You are right that it is important to make the distinction; and it is always possible to add "ghost" lineages to account for apparent time inconsistency in a reconstructed network. However, consistency can be a valuable criterion for choosing among reconstructions, as Leo van Iersel and I discussed in an earlier post (May 8, 2012).


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