Quotes & Sayings


We, and creation itself, actualize the possibilities of the God who sustains the world, towards becoming in the world in a fuller, more deeper way. - R.E. Slater

There is urgency in coming to see the world as a web of interrelated processes of which we are integral parts, so that all of our choices and actions have [consequential effects upon] the world around us. - Process Metaphysician Alfred North Whitehead

Kurt Gödel's Incompleteness Theorem says (i) all closed systems are unprovable within themselves and, that (ii) all open systems are rightly understood as incomplete. - R.E. Slater

The most true thing about you is what God has said to you in Christ, "You are My Beloved." - Tripp Fuller

The God among us is the God who refuses to be God without us, so great is God's Love. - Tripp Fuller

According to some Christian outlooks we were made for another world. Perhaps, rather, we were made for this world to recreate, reclaim, redeem, and renew unto God's future aspiration by the power of His Spirit. - R.E. Slater

Our eschatological ethos is to love. To stand with those who are oppressed. To stand against those who are oppressing. It is that simple. Love is our only calling and Christian Hope. - R.E. Slater

Secularization theory has been massively falsified. We don't live in an age of secularity. We live in an age of explosive, pervasive religiosity... an age of religious pluralism. - Peter L. Berger

Exploring the edge of life and faith in a post-everything world. - Todd Littleton

I don't need another reason to believe, your love is all around for me to see. – Anon

Thou art our need; and in giving us more of thyself thou givest us all. - Khalil Gibran, Prayer XXIII

Be careful what you pretend to be. You become what you pretend to be. - Kurt Vonnegut

Religious beliefs, far from being primary, are often shaped and adjusted by our social goals. - Jim Forest

We become who we are by what we believe and can justify. - R.E. Slater

People, even more than things, need to be restored, renewed, revived, reclaimed, and redeemed; never throw out anyone. – Anon

Certainly, God's love has made fools of us all. - R.E. Slater

An apocalyptic Christian faith doesn't wait for Jesus to come, but for Jesus to become in our midst. - R.E. Slater

Christian belief in God begins with the cross and resurrection of Jesus, not with rational apologetics. - Eberhard Jüngel, Jürgen Moltmann

Our knowledge of God is through the 'I-Thou' encounter, not in finding God at the end of a syllogism or argument. There is a grave danger in any Christian treatment of God as an object. The God of Jesus Christ and Scripture is irreducibly subject and never made as an object, a force, a power, or a principle that can be manipulated. - Emil Brunner

“Ehyeh Asher Ehyeh” means "I will be that who I have yet to become." - God (Ex 3.14) or, conversely, “I AM who I AM Becoming.”

Our job is to love others without stopping to inquire whether or not they are worthy. - Thomas Merton

The church is God's world-changing social experiment of bringing unlikes and differents to the Eucharist/Communion table to share life with one another as a new kind of family. When this happens, we show to the world what love, justice, peace, reconciliation, and life together is designed by God to be. The church is God's show-and-tell for the world to see how God wants us to live as a blended, global, polypluralistic family united with one will, by one Lord, and baptized by one Spirit. – Anon

The cross that is planted at the heart of the history of the world cannot be uprooted. - Jacques Ellul

The Unity in whose loving presence the universe unfolds is inside each person as a call to welcome the stranger, protect animals and the earth, respect the dignity of each person, think new thoughts, and help bring about ecological civilizations. - John Cobb & Farhan A. Shah

If you board the wrong train it is of no use running along the corridors of the train in the other direction. - Dietrich Bonhoeffer

God's justice is restorative rather than punitive; His discipline is merciful rather than punishing; His power is made perfect in weakness; and His grace is sufficient for all. – Anon

Our little [biblical] systems have their day; they have their day and cease to be. They are but broken lights of Thee, and Thou, O God art more than they. - Alfred Lord Tennyson

We can’t control God; God is uncontrollable. God can’t control us; God’s love is uncontrolling! - Thomas Jay Oord

Life in perspective but always in process... as we are relational beings in process to one another, so life events are in process in relation to each event... as God is to Self, is to world, is to us... like Father, like sons and daughters, like events... life in process yet always in perspective. - R.E. Slater

To promote societal transition to sustainable ways of living and a global society founded on a shared ethical framework which includes respect and care for the community of life, ecological integrity, universal human rights, respect for diversity, economic justice, democracy, and a culture of peace. - The Earth Charter Mission Statement

Christian humanism is the belief that human freedom, individual conscience, and unencumbered rational inquiry are compatible with the practice of Christianity or even intrinsic in its doctrine. It represents a philosophical union of Christian faith and classical humanist principles. - Scott Postma

It is never wise to have a self-appointed religious institution determine a nation's moral code. The opportunities for moral compromise and failure are high; the moral codes and creeds assuredly racist, discriminatory, or subjectively and religiously defined; and the pronouncement of inhumanitarian political objectives quite predictable. - R.E. Slater

God's love must both center and define the Christian faith and all religious or human faiths seeking human and ecological balance in worlds of subtraction, harm, tragedy, and evil. - R.E. Slater

In Whitehead’s process ontology, we can think of the experiential ground of reality as an eternal pulse whereby what is objectively public in one moment becomes subjectively prehended in the next, and whereby the subject that emerges from its feelings then perishes into public expression as an object (or “superject”) aiming for novelty. There is a rhythm of Being between object and subject, not an ontological division. This rhythm powers the creative growth of the universe from one occasion of experience to the next. This is the Whiteheadian mantra: “The many become one and are increased by one.” - Matthew Segall

Without Love there is no Truth. And True Truth is always Loving. There is no dichotomy between these terms but only seamless integration. This is the premier centering focus of a Processual Theology of Love. - R.E. Slater

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Note: Generally I do not respond to commentary. I may read the comments but wish to reserve my time to write (or write from the comments I read). Instead, I'd like to see our community help one another and in the helping encourage and exhort each of us towards Christian love in Christ Jesus our Lord and Savior. - re slater

Showing posts with label Science - Exploring Evolution Series. Show all posts
Showing posts with label Science - Exploring Evolution Series. Show all posts

Tuesday, April 28, 2015

Exploring Evolution Series - Early Tool Use by Humans





Wikipedia Links:



World’s oldest stone tools discovered in Kenya
http://news.sciencemag.org/africa/2015/04/world-s-oldest-stone-tools-discovered-kenya?utm_source=facebook&utm_medium=social&utm_campaign=facebook

By 
April 14, 2015

SAN FRANCISCO, CALIFORNIA—Researchers at a meeting here say they have found the oldest tools made by human ancestors—stone flakes dated to 3.3 million years ago. That’s 700,000 years older than the oldest-known tools to date, suggesting that our ancestors were crafting tools several hundred thousand years before our genus Homoarrived on the scene. If correct, the new evidence could confirm disputed claims for very early tool use, and it suggests that ancient australopithecines like the famed “Lucy” may have fashioned stone tools, too.



Until now, the earliest known stone tools had been found at the site of Gona in Ethiopia and were dated to 2.6 million years ago. These belonged to a tool technology known as the Oldowan, so called because the first examples were found more than 80 years ago at Olduvai Gorge in Tanzania by famous paleoanthropologists Louis and Mary Leakey. Then, in 2010, researchers working at the site of Dikika in Ethiopia—where an australopithecine child was also discovered—reported cut marks on animal bones dated to 3.4 million years ago; they argued that tool-using human ancestors made the linear marks. The claim was immediately controversial, however, and some argued that what seemed to be cut marks might have been the result of trampling by humans or other animals. Without the discovery of actual tools, the argument seemed likely to continue without resolution.



Now, those missing tools may have been found. In a talk at the annual meeting of the Paleoanthropology Society here, archaeologist Sonia Harmand of Stony Brook University in New York described the discovery of numerous tools at the site of Lomekwi 3, just west of Lake Turkana in Kenya, about 1000 kilometers from Olduvai Gorge. In 2011, Harmand’s team was seeking the site where a controversial human relative called Kenyanthropus platyops had been discovered in 1998. They took a wrong turn and stumbled upon another part of the area, called Lomekwi, near where Kenyanthropus had been found. The researchers spotted what Harmand called unmistakable stone tools on the surface of the sandy landscape and immediately launched a small excavation.



More tools were discovered under the ground, including so-called cores from which human ancestors struck off sharp flakes; the team was even able to fit one of the flakes back to its original core, showing that a hominin had crafted and then discarded both core and flake in this spot. The researchers returned for more digging the following year and have now uncovered nearly 20 well-preserved flakes, cores, and anvils apparently used to hold the cores as the flakes were struck off, all sealed in sediments that provided a secure context for dating. An additional 130 pieces have also been found on the surface, according to the talk.

“The artifacts were clearly knapped [created by intentional flaking] and not the result of accidental fracture of rocks,” Harmand told the meeting. Analysis of the tools showed that they had been rotated as flakes were struck off, which is also how Oldowan tools were crafted. The Lomekwi tools were somewhat larger than the average Oldowan artifacts, however. Dating of the sediments using paleomagnetic techniques—which track reversals in Earth’s magnetic field over time and have been used on many hominin finds from the well-studied Lake Turkana area—put them at about 3.3 million years old.


Although very recent research has now pushed back the origins of the genus Homo to as early as 2.8 million years ago, the tools are too old to have been made by the first fully fledged humans, Harmand said in her talk. The most likely explanation, she concluded, was that the artifacts were made either by australopithecines similar to Lucy or byKenyanthropus. Either way, toolmaking apparently began before the birth of our genus. Harmand and her colleagues propose to call the new tools the Lomekwian technology, she said, because they are too old and too distinct from Oldowan implements to represent the same technology.

Researchers who have seen the tools in person are enthusiastic about the claim. The finds are “very exciting,” says Alison Brooks, an anthropologist at George Washington University in Washington, D.C. “They could not have been created by natural forces … [and] the dating evidence is fairly solid.” She agrees that the tools are too early to have been made by Homo, suggesting that “technology played a major role in the emergence of our genus.”

The claim also looks good to paleoanthropologist Zeresenay Alemseged of the California Academy of Sciences here, a leader of the team that found cut marks on the Dikika animal bones. (At the meeting, another team member presented new arguments for the cut marks’ authenticity.) “With the cut marks from Dikika we had the victim” of the stone tools, Alemseged says. “Harmand’s discovery gives us the smoking gun.”


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Jill Pruetz says the environment and social tolerance may explain why savanna chimps,
particularly females, are more likely to hunt with tools. | Credit: Image courtesy of BBC


Iowa State anthropologist finds female chimps more likely to use tools when hunting
http://phys.org/wire-news/190547334/iowa-state-anthropologist-finds-female-chimps-more-likely-to-use.html

April 15, 2015

It was a discovery that changed what researchers knew about the hunting techniques of chimpanzees. In 2007, Jill Pruetz first reported savanna chimps at her research site in Fongoli, Senegal, were using tools to hunt prey. That alone was significant, but what also stood out to Pruetz was the fact that female chimps were the ones predominantly hunting with tools.

It was a point some dismissed or criticized because of the small sample size, but the finding motivated the Iowa State University anthropology professor to learn more. In the years following, Pruetz and her research team have documented more than 300 tool-assisted hunts. Their results, published in the journal Royal Society Open Science, support the initial findings - female chimps hunt with tools more than males.

Generally, adult male chimps are the main hunters and capture prey by hand. Researchers observed both male and female chimps using tools, but more than half of the hunts - 175 compared to 130 - were by females. While males made up about 60 percent of the hunting group, only around 40 percent of the hunts were by males.

"It's just another example of diversity in chimp behavior that we keep finding the longer we study wild chimps," Pruetz said. "It is more the exception than the rule that you'll find some sort of different behavior, even though we've studied chimps extensively."

Both male and female chimps primarily pursued galagos, or bush babies, in tool-assisted hunts. Pruetz says the chimps used a spear-like tool to jab at the animal hiding in tree cavities. She added that one explanation for the sex difference in tool use is that male chimps tended to be more opportunistic.

"What would often happen is the male would be in the vicinity of another chimp hunting with a tool, often a female, and the bush baby was able to escape the female and the male grabbed the bush baby as it fled," Pruetz said.

Why only Fongoli?

The savanna chimps at Fongoli are the only non-human population to consistently hunt prey with tools. Why is that the case? Pruetz, Walvoord Professor of Liberal Arts & Sciences at Iowa State, says a better question may be why are chimps at other sites not using this technique? It may be that they never learned the technique, she said. Tool hunting also may be a result of social tolerance that doesn't exist at other chimp sites.

"At Fongoli, when a female or low-ranking male captures something, they're allowed to keep it and eat it. At other sites, the alpha male or other dominant male will come along and take the prey. So there's little benefit of hunting for females, if another chimp is just going to take their prey item."

The environment is another factor. Pruetz says there are no red colobus monkeys, the preferred prey of chimps at other sites, because of the dry conditions at Fongoli. The bush babies are more prevalent and prey that female chimps can access using tools.

Hunting vs. gathering

Pruetz, a National Geographic Emerging Explorer, is often asked why the female's use of tools is considered hunting rather than gathering. It's a question that reflects stereotypes associated with female chimp behavior. The similarities to termite or ant fishing, which is sometimes used as a comparison for tool-assisted hunting, are superficial, she said. The behavior of the prey and effort required by the hunter is different.

"Fishing for termites is a very different activity than jabbing for a bush baby," Pruetz said. "With fishing, termites grab on to a twig and don't let go and the chimp eats the termites off the twig. When hunting, the bush baby tries to bite, escape or hide from the chimp. The chimps are really averse to being bitten by a bush baby."

While a bush baby is smaller than, and not as fierce as a monkey, Pruetz says it is really no different than humans hunting doves instead of deer. Ultimately, the tool-assisted hunting allows female chimps, which may be less likely to run down prey, access to a nutritional food source, Pruetz said.

More information:

Provided by Iowa State University

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Archaeological Dating of Human Origins


Early Human Migration Map


related references - 

Exploring Evolution Series - The Evolutionary Tree of Life

Evolutionary Geneology

Trace any branch back through time to see how it connects to any other of life's major branches. Use the curved time scale to find when their common ancestor lived. Five mass extinctions are marked by an abrupt decrease in life's diversity, followed by renewed diversity.

click to enlarge

source link


The geologic time scale on the Great Tree of Life begins at the center bottom, at Earth's birth, more than four thousand million (4 billion) years ago. As you move away from this center point toward the outer margin of the tree, geologic time gets younger and younger, until at the outer curved edge of the tree you arrive at the present day.

Times on the geologic time scale are shown at the base of the diagram in millions of years before present. These are traced through the tree of life along curved, dashed time lines.

  • All points on a curved, dashed time line are of the same age. For example; any point on the dashed time line labeled '1000' represents a time 1000 million years (that's equal to one billion years) in the past.
  • Similarly, any point on the outer margin of the tree represents time today. Any point on the tree of life can be placed in geologic time by using these curved time lines.

Biological evolution proposes that all living things, including humans, have a common ancestor with any other living thing. On the Great Tree of Life you can explore when in the distant past these common ancestors lived. For example, explore when the common ancestor between fish and humans lived by using the partial Great Tree of Life diagram below. Begin by tracing the human branch back through time along the yellow guide lines. Start at the point on the outer margin of the tree (in other words, today) that is labeled 'humans'. Follow it back in time down the dark brown mammal branch to where it joins the light brown mammal-like reptile branch, then continue back to the point where you meet the bright blue fish branch. This point on the Great Tree of Life represents the common ancestor between humans and fish (in this case, salmon), and, by using the time scale, you can see that this creature lived roughly 440 million years ago. You could reach this same common ancestor by tracing from modern salmon. The time of a common ancestor between any two of life's branches, large or small, on the Great Tree of Life can be found in the same way.


Evolutionary Scale of Relatedness




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Grand tree of life study shows a clock-like 
trend in new species emergence and diversity
http://phys.org/news/2015-03-grand-tree-life-clock-like-trend.html

March 3, 2015

"The constant rate of diversification that we have found indicates that the ecological niches of life are not being filled up and saturated," said Temple professor S. Blair Hedges, a member of the research team's study, published in the early online edition of the journal Molecular Biology and Evolution. "This is contrary to the popular alternative model which predicts a slowing down of diversification as niches fill up with species."

The tree of life compiled by the Temple team is depicted in a new way —- a cosmologically-inspired galaxy of life view —- and contains more than 50,000 species in a tapestry spiraling out from the origin of life.

For the massive meta-study effort, researchers painstakingly assembled data from 2,274 molecular studies, with 96 percent published in the last decade. They built new computer algorithms and tools to synthesize this largest collection of evolutionary peer-reviewed species diversity timelines published to date to produce this Time Tree of Life.

The study also challenges the conventional view of adaptation being the principal force driving species diversification, but rather, underscores the importance of random genetic events and geographic isolation in speciation, taking about 2 million years on average for a new species to emerge onto the scene.

"This finding shows that speciation is more clock-like than people have thought," said Hedges. "Taken together, this indicates that speciation and diversification are separate processes from adaptation, responding more to isolation and time. Adaptation is definitely occurring, so this does not disagree with Darwinism. But it goes against the popular idea that adaptation drives speciation, and against the related concept of punctuated equilibrium which associates adaptive change with speciation."

Besides the new evolutionary insights gained in this study, their Timetree of Life will provide opportunities for researchers to make other discoveries across disciplines, wherever an evolutionary perspective is needed, including, for example, studies of disease and medicine, and the effect of climate change on future species diversity.

Researchers around the world utilize molecular clocks to estimate species divergence times, calculating DNA mutational rates with species divergence times from gene and genomic sequences, that together with the fossil record and geological history, provide a constantly improving view of Darwin's "grandeur of life."

These new results add to the decade-long efforts of the Timetree of Life initiative (TTOL), which includes internet tools and a book, led by team members Hedges and Sudhir Kumar. "The ultimate goal of the TTOL is to chart the timescale of life—to discover when each species and all their ancestors originated, all the way back to the origin of life some four billion years ago," said Hedges.

As an ongoing service to the scientific community, Hedges and Kumar plan to continue adding new data to TTOL from future peer-reviewed studies. They also will improve their current tools, such as web and smartphone apps, and develop new tools, that will make it easier to access the information and to explore the TTOL, and for scientists to update the growing tree with their new data.


click here for larger visual
(and click a second time to enlarge once more)

source link - The tree of life compiled by Temple University researchers is depicted in a new way -- a cosmologically inspired galaxy of life view -- and contains more than 50,000 species in a tapestry spiraling out from the origin of life. | Credit: Temple University

Monday, April 20, 2015

Exploring Evolution Series - If Earth Never Had Life, Continents Would Be Smaller




If Earth never had life, continents would be smaller

April 16, 2015

VIENNA—It may seem counterintuitive, but life on Earth, even with all the messy erosion it creates, keeps continents growing. Presenting here this week at the annual meeting of the European Geosciences Union, researchers say it's the erosion itself that makes the difference in continental size. Plant life, for example, can root its way through rock, breaking rocks into sediment. The sediments, like milk-dunked cookies, carry liquid water in their pores, which allows more water to be recycled back into Earth’s mantle. If not enough water is present in the mantle about 100 to 200 km deep to keep things flowing, continental production decreases. The authors built a planetary evolution model to show how these processes relate and found that if continental weathering and erosion rates decreased, at first the continents would remain large. But over time, if life never evolved on Earth, not enough water would make its way to the mantle to help produce more continental crust, and whatever continents there were would then shrink. Now, continents cover 40% of the planet. Without life, that coverage would shrink to 30%. In a more extreme case, if life never existed, the continents might only cover 10% of Earth. When it comes to a habitable planet, life even plays a role in building the habitats.

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Geophysical Research Abstracts
Vol. 17, EGU2015-13398, 2015
EGU General Assembly 2015
© Author(s) 2015 CC Attribution 3.0 License

Feedback cycles in planetary evolution including continental growth and mantle hydration, and the impact of life

Dennis Höning and Tilman Spohn
German Aerospace Center (DLR), Institute of Planetary Research, Berlin, Germany (Dennis.Hoening@dlr.de)

"The Earth’s evolution is significantly affected by several intertwined feedback cycles. One of these feedback loops describes the production and erosion of continental crust. Continents are produced in subduction zones, whose total length in turn is determined by the fraction of continental crust. Furthermore, the fraction of continental crust determines the amount of eroded sediments. These sediments eventually enter subduction zones and affect the water transport into the mantle. As the biosphere enhances weathering and erosion of continental crust, we show how life on Earth can enter this feedback cycle and stabilize the present day state of the Earth. A second feedback loop – coupled to the first one – includes the mantle water cycle. Water in the Earth’s mantle reduces its viscosity, and therefore increases the speed of mantle convection and plate subduction.

Here, we present a thermal evolution model of the Earth which reproduces the present day observations. We investigate the influence of the biosphere during the Earth’s evolution on continental growth and mantle hydration. Finally, we discuss implications on the evolution of plate-tectonics planets beyond our solar system."













Thursday, March 12, 2015

Exploring Evolution Series - Mankind Enters a New Anthropocene Era



This article is from the In-Depth Report 400 PPM: What's Next for a Warming Planet


CO2 Levels for February Eclipsed Prehistoric Highs
http://www.scientificamerican.com/article/co2-levels-for-february-eclipsed-prehistoric-highs/?utm_source=nextdraft&utm_medium=email

Global warming is headed back to the future as the CO2 level reaches a new high

March 5, 2015 |By David Biello
More and more carbon dioxide molecules are accumu-lating in Earth's atmosphere | Astronaut photograph from International Space Station, courtesy of NASA.

February is one of the first months since before months had names to boast carbon dioxide concentrations at 400 parts per million.* Such CO2 concentrations in the atmosphere have likely not been seen since at least the end of the Oligocene 23 million years ago, an 11-million-year-long epoch of gradual climate cooling that most likely saw CO2 concentrations drop from more than 1,000 ppm. Those of us alive today breathe air never tasted by any of our ancestors in the entire Homo genus.

Homo sapiens sapiens—that’s us—has subsisted for at least 200,000 years on a planet that has oscillated between 170 and 280 ppm, according to records preserved in air bubbles trapped in ice. Now our species has burned enough fossil fuels and cut down enough trees to push CO2 to 400 ppm—and soon beyond. Concentrations rise by more than two ppm per year now. Raising atmospheric concentrations of CO2 to 0.04 percent may not seem like much but it has been enough to raise the world's annual average temperature by a total of 0.8 degree Celsius so far. More warming is in store, thanks to the lag between CO2 emissions and the extra heat each molecule will trap over time, an ever-thickening blanket wrapped around the planet in effect. Partially as a result of this atmospheric change, scientists have proposed that the world has entered a new geologic epoch, dubbed the Anthropocene and marked by this climate shift, among other indicators.



We aren't done yet. Greater concentrations will be achieved, thanks to all the existingcoal-fired power plantsmore than a billion cars powered by internal combustion on the roads today and yet more clearing of forests. That's despite an avowed goal to stop at 450 ppm, the number broadly (if infirmly) linked to an average temperature rise of no more than 2 degrees C. More likely, by century's end enough CO2 will have been spewed from burning long-buried stores of fossilized sunshine to raise concentrations to 550 ppm or more, enough to raise average annual temperatures by as much as 6 degrees C in the same span. That may be more climate change than human civilization can handle, along with many of the other animals and plants living on Earth, already stressed by other human encroachments. The planet will be fine though; scientists have surmised from long-term records in rock that Earth has seen levels beyond 1,000 ppm in the past.

The current high levels of CO2 have spurred calls, most recently from the National Academy of Sciences, to develop technologies to retrieve carbon from the atmosphere. The U.N. Intergovernmental Panel on Climate Change relies for that on growing plants, burning them instead of coal to produce electricity, capturing the resulting CO2 in the smokestack and burying it—or in the argot: BECCS, bioenergy with carbon capture and storage, a few examples of which are scattered around the globe. Other schemes range from artificial trees to scour the skies of excess CO2 to fertilizing the oceans with iron and having diatoms do the invisible work for us.

Climate change is inevitable and, if history is any guide to what can be expected, so, too, may be regime change. A few years of diminished rainfall and attendant bad harvests have been enough in the past to fell empires, such as in Mesopotamia orChina. The world's current roster of nations struggles to hash out a global plan to cut the pollution that causes climate change, which currently stands at 90 pages of negotiating text. In addition, one nation has submitted its individual plan (or "individual nationally determined contribution," INDC in the argot) to accomplish this feat—Switzerland.

The plans of China, the European Union and the U.S. are already broadly known, if not formally submitted. Together, they are both the biggest steps ever taken to address global warming and likely insufficient to prevent too much climate change, scientific analyses suggest. The E.U., U.S. and China remain reliant on fossil fuels and the world is slow to change that habit thus far. In fact, China has become the world's largest polluter and millions of Chinese have lifted themselves out of poverty with the power from burning more and more coal, a trick India hopes to follow in the near future.

For the Swiss, the bulk of pollution comes from driving cars and controlling the climate inside buildings. Their long-term plan is "to reduce per capita emissions to one–1.5 tonnes CO2-equivalent," the INDC states. "These unavoidable emissions will have to be eventually compensated through sinks or removals." In a world that spews more and more CO2 but needs to get to below zero emissions, bring on those sinks and removals. In the meantime the sawtooth record of rising atmospheric CO2 levels moves ever upward and March 2015 will likely be the name of the next month to boast levels above 400 ppm.

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Mass Deaths in Americas Start New CO2 Epoch

http://www.scientificamerican.com/article/mass-deaths-in-americas-start-new-co2-epoch/?WT.mc_id=SA_Facebook

A new proposal pegs the start of the Anthropocene to the Little Ice Age and the Columbian Exchange

amazon-rainforest
Mass deaths after Europeans reached the Americas 
may have allowed forests to regrow, reducing atmo-
spheric concentrations of carbon dioxide and kicking
off a proposed new Anthropocene geologic epoch. | 
Courtesy of NASA
"Placing the Anthropocene at this time highlights the idea that colonialism, global trade and the desire for wealth and profits began driving Earth towards a new state," argues ecologist Simon Lewis of Leeds University and the University College of London. "We are a geological force of nature, but that power is unlike any other force of nature in that it is reflexive, and can be used, withdrawn or modified."

Lewis and Mark Maslin, a geologist at UCL, dub the decrease in atmospheric carbon dioxide the "Orbis spike," from the Latin for world, because after 1492 human civilization has progressively globalized. They make the case that human impacts on the planet have been dramatic enough to warrant formal recognition of theAnthropocene epoch and that the Orbis spike should serve as the marker of the start of this new epoch in a paper published in Nature on March 12. (Scientific American is part of Nature Publishing Group.)


The Anthropocene is not a new idea. As far back as the 18th century, the first scientific attempt to lay out a chronology of Earth's geologic history ended with a human epoch. By the 19th century, the idea was commonplace, appearing as the Anthropozoic ("human life rocks") or the "Era of Man" in geology textbooks. But by the middle of the 20th century, the idea of the Holocene—a word which means "entirely recent" in Greek and designates the most recent period in which the great glacial ice sheets receded—had come to dominate, and incorporated the idea of humans as an important element of the current epoch but not the defining one.

That idea is no longer sufficient, according to scientists ranging from geologists to climatologists. Human impacts have simply grown too large, whether it's the flood of nitrogen released into the world by the invention of the so-called Haber-Bosch process for wresting the vital nutrient from the air or the fact that civilization now moves more earth and stone than all the world's rivers put together.

Researchers have advanced an array of proposals for when this putative new epoch might have begun. Some link it to the start of the mass extinction of large mammalssuch as woolly mammoths and giant kangaroos some 50,000 years ago or the advent of agriculture around 10,000 years ago. Others say the Anthropocene is more recent, tied to the beginning of the uptick of atmospheric CO2 concentrations after the invention of an effective coal-burning steam engine.

The most prominent current proposal connects the dawn of the Anthropocene to that of the nuclear age—long-lived radionuclides leave a long-lived record in the rock. The boom in human population and consumption of everything from copper to corn after 1950 or so, known as the "Great Acceleration," roughly coincides with this nuclear marker, as does the advent of plastics and other remnants of industrial society, dubbed technofossils by Jan Zalasiewicz of the University of Leicester, the geologist in charge of the group that is advocating for incorporating the Anthropocene into the geologic time scale. The radionuclides can then serve as what geologists call a Global Stratotype Section and Point (GSSP), more commonly known as a "golden spike." Perhaps the most famous such golden spike is the thin layer of iridium found in rock exposed near El Kef, Tunisia, that tells of the asteroid impact that ended the reign of the dinosaurs and thus marked the end of the Cretaceous Period about 65 million years ago.



Lewis and Maslin reject this radionuclide spike because it is not tied to a "world-changing event," at least not yet, though it is a clear signal in the rock. On the other hand, their Orbis spike in 1610 reflects both the most recent CO2 nadir as well as the redistribution of plants and animals around the world around that time, a literal changing of the world.

Much like the golden spike that marks the end of the dinosaurs, the proposed Orbis spike itself would be tied to the low point of atmospheric CO2 concentrations around 1610, as recorded in ice cores, where tiny trapped bubbles betray past atmospheres. Further geologic evidence will come from the appearance of corn pollen in sediment cores taken in Europe and Asia at that time, among other indicators that will complement the CO2 record. Therefore, scientists looking at ice cores, mud or even rock will find this epochal shift in the future.



The CO2 drop coincides with what climatologists call the Little Ice Age. That cooling event may have been tied to regenerated forests and other plants growing on some 50 million hectares of land abandoned by humans after the mass death brought on by disease and warfare, Lewis and Maslin suggest. And it wasn't just the death of millions of Americans, as many as three-quarters of the entire population of two continents. The enslavement (or death) of as many as 28 million Africans for labor in the new lands also may have added to the climate impact. The population of the regions of northwestern Africa most affected by the slave trade did not begin to recover until the end of the 19th century. In other words, from 1600 to 1900 or so swathes of that region may have been regrowing forest, enough to draw down CO2, just like the regrowth of the Amazon and the great North American woods, though this hypothesis remains in some dispute.

Whether in 1610, 1944 or 50,000 B.C., the new designation would mean we are living in a new Anthropocene epoch, part of the Quaternary Period, which started more 2.5 million years ago with the advent of the cyclical growth and retreat of massive glaciers. The Quaternary is part of the Cenozoic, or "recent life," Era, which began 66 million years ago, which is, in turn, part of the Phanerozoic ("revealed life") Eon, which started 541 million years ago and encompasses all of complex life that has ever lived on this planet. In the end, the Anthropocene might supplant its old rival the Holocene. "It is only designated an epoch, when other interglacials are not, because back in the 18th century geologists thought humans were a very recent species, arriving via divine intervention or evolving on Earth in the Holocene," Lewis argues, but scientists now know Homo sapiens arose more than 200,000 years ago in the Pleistocene epoch. "Humans are a Pleistocene species, so the reason for calling the Holocene an epoch is a relic of the past."

Maslin suggests downgrading the Holocene to a stage within the Pleistocene, like other interglacial spans in the geologic record. But Zalasiewicz disagrees with this bid to get rid of the Holocene. "I don't see the need," he says. "Systematic tracing of a Holocene / Anthropocene boundary globally would be a very illuminating process in all sorts of ways."

The changes wrought by humans over the course of the last several centuries, if not longer, will echo in the future, whether in the form of transplanted species, like earthworms or cats, crop pollen in lake sediments or even entire fossilized cities. Still, whether the Anthropocene started tens, hundreds or thousands of years ago, it accounts for a minute fraction of Earth's history. And this new epoch could end quickly or endure through millennia, depending on the choices our species makes now. "Embracing the Anthropocene reverses 500 years of scientific discoveries that have made humans more and more insignificant," Maslin notes. "We argue that Homo sapiens are central to the future of the only place where life is known to exist."


Monday, December 22, 2014

Exploring Evolution Series - What Is the Driving Force Behind Evolutionary Life? Perhaps "Adaptive (Replicating) Organization" Driven by "Energy Dissipation" (the Second Law of Thermodynamics)


Katherine Taylor for Quanta Magazin | Jeremy England, a 31-year-old physicist at MIT,
thinks he has found the underlying physics driving the origin and evolution of life.


This Physicist Has A Groundbreaking Idea About Why Life Exists

http://www.businessinsider.com/groundbreaking-idea-of-lifes-origin-2014-12


DEC. 8, 2014, 4:48 PM

Why does life exist?

Popular hypotheses credit a primordial soup, a bolt of lightning, and a colossal stroke of luck.

But if a provocative new theory is correct, luck may have little to do with it. Instead, according to the physicist proposing the idea, the origin and subsequent evolution of life follow from the fundamental laws of nature and “should be as unsurprising as rocks rolling downhill.”

From the standpoint of physics, there is one essential difference between living things and inanimate clumps of carbon atoms: The former tend to be much better at capturing energy from their environment and dissipating that energy as heat. 

Jeremy England, a 31-year-old assistant professor at the Massachusetts Institute of Technology, has derived a mathematical formula that he believes explains this capacity. The formula, based on established physics, indicates that when a group of atoms is driven by an external source of energy (like the sun or chemical fuel) and surrounded by a heat bath (like the ocean or atmosphere), it will often gradually restructure itself in order to dissipate increasingly more energy. This could mean that under certain conditions, matter inexorably acquires the key physical attribute associated with life.

Kristian Peters | Cells from the moss Plagiomnium affine with visible
chloroplasts, organelles that conduct photosynthesis by capturing sunlight.

“You start with a random clump of atoms, and if you shine light on it for long enough, it should not be so surprising that you get a plant,” England said.

England’s theory is meant to underlie, rather than replace, Darwin’s theory of evolution by natural selection, which provides a powerful description of life at the level of genes and populations. “I am certainly not saying that Darwinian ideas are wrong,” he explained. “On the contrary, I am just saying that from the perspective of the physics, you might call Darwinian evolution a special case of a more general phenomenon.”

His idea, detailed in a paper and further elaborated in a talk he is delivering at universities around the world, has sparked controversy among his colleagues, who see it as either tenuous or a potential breakthrough, or both.

England has taken “a very brave and very important step,” said Alexander Grosberg, a professor of physics at New York University who has followed England’s work since its early stages. The “big hope” is that he has identified the underlying physical principle driving the origin and evolution of life, Grosberg said.

“Jeremy is just about the brightest young scientist I ever came across,” said Attila Szabo, a biophysicist in the Laboratory of Chemical Physics at the National Institutes of Health who corresponded with England about his theory after meeting him at a conference. “I was struck by the originality of the ideas.”

Others, such as Eugene Shakhnovich, a professor of chemistry, chemical biology and biophysics at Harvard University, are not convinced. “Jeremy’s ideas are interesting and potentially promising, but at this point are extremely speculative, especially as applied to life phenomena,” Shakhnovich said.

England’s theoretical results are generally considered valid. It is his interpretation — that his formula represents the driving force behind a class of phenomena in nature that includes life — that remains unproven. But already, there are ideas about how to test that interpretation in the lab.

“He’s trying something radically different,” said Mara Prentiss, a professor of physics at Harvard who is contemplating such an experiment after learning about England’s work. “As an organizing lens, I think he has a fabulous idea. Right or wrong, it’s going to be very much worth the investigation.”

Courtesy of Jeremy England | A computer simulation by Jeremy England
and colleagues shows a system of particles confined inside a viscous fluid
in  which the turquoise particles are driven by an oscillating force. Over
time (from top to bottom), the force triggers the formation of more bonds
among the particles.

At the heart of England’s idea is the second law of thermodynamics, also known as the law of increasing entropy or the “arrow of time.” Hot things cool down, gas diffuses through air, eggs scramble but never spontaneously unscramble; in short, energy tends to disperse or spread out as time progresses. Entropy is a measure of this tendency, quantifying how dispersed the energy is among the particles in a system, and how diffuse those particles are throughout space. It increases as a simple matter of probability: There are more ways for energy to be spread out than for it to be concentrated.

Thus, as particles in a system move around and interact, they will, through sheer chance, tend to adopt configurations in which the energy is spread out. Eventually, the system arrives at a state of maximum entropy called “thermodynamic equilibrium,” in which energy is uniformly distributed. A cup of coffee and the room it sits in become the same temperature, for example.

As long as the cup and the room are left alone, this process is irreversible. The coffee never spontaneously heats up again because the odds are overwhelmingly stacked against so much of the room’s energy randomly concentrating in its atoms.

Although entropy must increase over time in an isolated or “closed” system, an “open” system can keep its entropy low — that is, divide energy unevenly among its atoms — by greatly increasing the entropy of its surroundings. In his influential 1944 monograph “What Is Life?” the eminent quantum physicist Erwin Schrödinger argued that this is what living things must do. A plant, for example, absorbs extremely energetic sunlight, uses it to build sugars, and ejects infrared light, a much less concentrated form of energy. The overall entropy of the universe increases during photosynthesis as the sunlight dissipates, even as the plant prevents itself from decaying by maintaining an orderly internal structure.

Life does not violate the second law of thermodynamics, but until recently, physicists were unable to use thermodynamics to explain why it should arise in the first place. In Schrödinger’s day, they could solve the equations of thermodynamics only for closed systems in equilibrium. In the 1960s, the Belgian physicist Ilya Prigogine made progress on predicting the behavior of open systems weakly driven by external energy sources (for which he won the 1977 Nobel Prize in chemistry). But the behavior of systems that are far from equilibrium, which are connected to the outside environment and strongly driven by external sources of energy, could not be predicted.

This situation changed in the late 1990s, due primarily to the work of Chris Jarzynski, now at the University of Maryland, and Gavin Crooks, now at Lawrence Berkeley National Laboratory. Jarzynski and Crooks showed that the entropy produced by a thermodynamic process, such as the cooling of a cup of coffee, corresponds to a simple ratio: the probability that the atoms will undergo that process divided by their probability of undergoing the reverse process (that is, spontaneously interacting in such a way that the coffee warms up). As entropy production increases, so does this ratio: A system’s behavior becomes more and more “irreversible.” The simple yet rigorous formula could in principle be applied to any thermodynamic process, no matter how fast or far from equilibrium. “Our understanding of far-from-equilibrium statistical mechanics greatly improved,” Grosberg said. England, who is trained in both biochemistry and physics, started his own lab at MIT two years ago and decided to apply the new knowledge of statistical physics to biology.

Using Jarzynski and Crooks’ formulation, he derived a generalization of the second law of thermodynamics that holds for systems of particles with certain characteristics: The systems are strongly driven by an external energy source such as an electromagnetic wave, and they can dump heat into a surrounding bath. This class of systems includes all living things. England then determined how such systems tend to evolve over time as they increase their irreversibility. “We can show very simply from the formula that the more likely evolutionary outcomes are going to be the ones that absorbed and dissipated more energy from the environment’s external drives on the way to getting there,” he said. The finding makes intuitive sense: Particles tend to dissipate more energy when they resonate with a driving force, or move in the direction it is pushing them, and they are more likely to move in that direction than any other at any given moment.

“This means clumps of atoms surrounded by a bath at some temperature, like the atmosphere or the ocean, should tend over time to arrange themselves to resonate better and better with the sources of mechanical, electromagnetic or chemical work in their environments,” England explained.

Courtesy of Michael Brenner | Proceedings of the National Academy of Sciences

Self-Replicating Sphere Clusters: According to new research at Harvard, coating
the surfaces of microspheres can cause them to spontaneously assemble into a
chosen structure, such as a polytetrahedron (red), which then triggers nearby
spheres  into forming an identical structure.

Self-replication (or reproduction, in biological terms), the process that drives the evolution of life on Earth, is one such mechanism by which a system might dissipate an increasing amount of energy over time.

As England put it, “A great way of dissipating more is to make more copies of yourself.”

In a September paper in the Journal of Chemical Physics, he reported the theoretical minimum amount of dissipation that can occur during the self-replication of RNA molecules and bacterial cells, and showed that it is very close to the actual amounts these systems dissipate when replicating.

He also showed that RNA, the nucleic acid that many scientists believe served as the precursor to DNA-based life, is a particularly cheap building material. Once RNA arose, he argues, its “Darwinian takeover” was perhaps not surprising.

The chemistry of the primordial soup, random mutations, geography, catastrophic events and countless other factors have contributed to the fine details of Earth’s diverse flora and fauna. But according to England’s theory, the underlying principle driving the whole process is dissipation-driven adaptation of matter.

This principle would apply to inanimate matter as well. “It is very tempting to speculate about what phenomena in nature we can now fit under this big tent of dissipation-driven adaptive organization,” England said. “Many examples could just be right under our nose, but because we haven’t been looking for them we haven’t noticed them.”

Scientists have already observed self-replication in nonliving systems. According to new research led by Philip Marcus of the University of California, Berkeley, and reported in Physical Review Letters in August, vortices in turbulent fluids spontaneously replicate themselves by drawing energy from shear in the surrounding fluid. And in a paper in Proceedings of the National Academy of Sciences, Michael Brenner, a professor of applied mathematics and physics at Harvard, and his collaborators present theoretical models and simulations of microstructures that self-replicate. These clusters of specially coated microspheres dissipate energy by roping nearby spheres into forming identical clusters. “This connects very much to what Jeremy is saying,” Brenner said.

Besides self-replication, greater structural organization is another means by which strongly driven systems ramp up their ability to dissipate energy. A plant, for example, is much better at capturing and routing solar energy through itself than an unstructured heap of carbon atoms. Thus, England argues that under certain conditions, matter will spontaneously self-organize. This tendency could account for the internal order of living things and of many inanimate structures as well. “Snowflakes, sand dunes and turbulent vortices all have in common that they are strikingly patterned structures that emerge in many-particle systems driven by some dissipative process,” he said. Condensation, wind and viscous drag are the relevant processes in these particular cases.

“He is making me think that the distinction between living and nonliving matter is not sharp,” said Carl Franck, a biological physicist at Cornell University, in an email. “I’m particularly impressed by this notion when one considers systems as small as chemical circuits involving a few biomolecules.”

Wilson Bentley | If a new theory is correct, the same physics it identifies as
responsible for the origin of  living things could explain the formation of
many  other patterned structures in nature. Snowflakes, sand dunes and
self-replicating vortices in the protoplanetary disk may all be examples
of  dissipation-driven adaptation.

England’s bold idea will likely face close scrutiny in the coming years. 

He is currently running computer simulations to test his theory that systems of particles adapt their structures to become better at dissipating energy. The next step will be to run experiments on living systems.

Prentiss, who runs an experimental biophysics lab at Harvard, says England’s theory could be tested by comparing cells with different mutations and looking for a correlation between the amount of energy the cells dissipate and their replication rates.

“One has to be careful because any mutation might do many things,” she said. “But if one kept doing many of these experiments on different systems and if [dissipation and replication success] are indeed correlated, that would suggest this is the correct organizing principle.”

Brenner said he hopes to connect England’s theory to his own microsphere constructions and determine whether the theory correctly predicts which self-replication and self-assembly processes can occur — “a fundamental question in science,” he said.

Having an overarching principle of life and evolution would give researchers a broader perspective on the emergence of structure and function in living things, many of the researchers said. “Natural selection doesn’t explain certain characteristics,” said Ard Louis, a biophysicist at Oxford University, in an email. These characteristics include a heritable change to gene expression called methylation, increases in complexity in the absence of natural selection, and certain molecular changes Louis has recently studied.

If England’s approach stands up to more testing, it could further liberate biologists from seeking a Darwinian explanation for every adaptation and allow them to think more generally in terms of dissipation-driven organization. They might find, for example, that “the reason that an organism shows characteristic X rather than Y may not be because X is more fit than Y, but because physical constraints make it easier for X to evolve than for Y to evolve,” Louis said.

“People often get stuck in thinking about individual problems,” Prentiss said. Whether or not England’s ideas turn out to be exactly right, she said, “thinking more broadly is where many scientific breakthroughs are made.”

Emily Singer contributed reporting.